Reproducible Research

7 hours to complete 3 weeks at 2 hours a week
Flexible Schedule

Roger D. Peng, PhD , Jeff Leek, PhD , Brian Caffo, PhD

What You’ll Learn

Organize data analysis to help make it more reproducible

Write up a reproducible data analysis using knitr

Determine the reproducibility of analysis project

Publish reproducible web documents using Markdown

Skills You’ll Gain

Technical Documentation Verification And Validation Statistical Reporting Data Validation R Programming Knitr Data analysis Statistical Analysis Rmarkdown Data Sharing

Shareable Certificate

Earn a shareable certificate to add to your LinkedIn profile.

Develop Your Specialized Knowledge

Learn new concepts from industry experts

Gain a foundational understanding of a subject or tool

Develop job-relevant skills with hands-on projects

Earn a shareable career certificate

There are 4 modules in this course

This week will cover the basic ideas of reproducible research since they may be unfamiliar to some of you. We also cover structuring and organizing a data analysis to help make it more reproducible. I recommend that you watch the videos in the order that they are listed on the web page, but watching the videos out of order isn't going to ruin the story.

This week we cover some of the core tools for developing reproducible documents. We cover the literate programming tool knitr and show how to integrate it with Markdown to publish reproducible web documents. We also introduce the first peer assessment which will require you to write up a reproducible data analysis using knitr.

This week covers what one could call a basic check list for ensuring that a data analysis is reproducible. While it's not absolutely sufficient to follow the check list, it provides a necessary minimum standard that would be applicable to almost any area of analysis.

This week there are two case studies involving the importance of reproducibility in science for you to watch.