Algorithms for DNA Sequencing

1 week to complete at 10 hours a week
Flexible Schedule

Ben Langmead, PhD , Jacob Pritt

Skills You’ll Gain

Algorithms Life Sciences Molecular Biology Bioinformatics Python Programming Data analysis Data Structures Computational Thinking

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There are 4 modules in this course

This module we begin our exploration of algorithms for analyzing DNA sequencing data. We'll discuss DNA sequencing technology, its past and present, and how it works.

In this module, we learn useful and flexible new algorithms for solving the exact and approximate matching problems. We'll start by learning Boyer-Moore, a fast and very widely used algorithm for exact matching

This week we finish our discussion of read alignment by learning about algorithms that solve both the edit distance problem and related biosequence analysis problems, like global and local alignment.

In the last module we began our discussion of the assembly problem and we saw a couple basic principles behind it. In this module, we'll learn a few ways to solve the alignment problem.